HL_8I9W_044

3D structure

PDB id

8I9W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUGUUG

Length

8 nucleotides

Bulged bases

8I9W|1|C1|U|3295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9W_044 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3599

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8I9W|1|C1|C|3289
8I9W|1|C1|C|3290
8I9W|1|C1|U|3291
8I9W|1|C1|U|3292
8I9W|1|C1|G|3293
8I9W|1|C1|U|3294
8I9W|1|C1|U|3295
8I9W|1|C1|G|3296

Current chains

Chain C1

RNA (3341-MER)

Nearby chains