HL_8I9Y_005

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

8I9Y|1|C1|C|193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0917

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8I9Y|1|C1|C|187
8I9Y|1|C1|U|188
8I9Y|1|C1|G|189
8I9Y|1|C1|G|190
8I9Y|1|C1|A|191
8I9Y|1|C1|A|192
8I9Y|1|C1|C|193
8I9Y|1|C1|G|194

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LY

60S ribosomal protein L26-like protein

Chain Le

60S ribosomal protein L32-like protein