HL_8I9Y_013

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8I9Y|1|C1|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_013 not in the Motif Atlas

Geometric match to HL_5TBW_068

Geometric discrepancy: 0.302

The information below is about HL_5TBW_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8I9Y|1|C1|C|533
8I9Y|1|C1|U|534
8I9Y|1|C1|C|535
8I9Y|1|C1|C|536
8I9Y|1|C1|G|537
8I9Y|1|C1|G|538

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LH

60S ribosomal protein l9-like protein