HL_8I9Y_017

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8I9Y|1|C1|U|718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_017 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.1395

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8I9Y|1|C1|C|716
8I9Y|1|C1|U|717
8I9Y|1|C1|U|718
8I9Y|1|C1|C|719
8I9Y|1|C1|G|720
8I9Y|1|C1|G|721

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LQ

Ribosomal protein L18-like protein