HL_8I9Y_019

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_019 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.2209

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8I9Y|1|C1|G|825
8I9Y|1|C1|G|826
8I9Y|1|C1|A|827
8I9Y|1|C1|A|828
8I9Y|1|C1|A|829
8I9Y|1|C1|C|830

Current chains

Chain C1

RNA (3341-MER)

Nearby chains