HL_8I9Y_020

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGCAAGAUC

Length

10 nucleotides

Bulged bases

8I9Y|1|C1|C|862

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8I9Y|1|C1|G|859
8I9Y|1|C1|U|860
8I9Y|1|C1|G|861
8I9Y|1|C1|C|862
8I9Y|1|C1|A|863
8I9Y|1|C1|A|864
8I9Y|1|C1|G|868
8I9Y|1|C1|A|869
8I9Y|1|C1|U|870
8I9Y|1|C1|C|871

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CG

60S ribosome subunit biogenesis protein NIP7

Chain CS

AdoMet-dependent rRNA methyltransferase SPB1

Chain CT

Nucleolar complex-associated protein 3

Chain CY

Putative NOC2 family protein