HL_8I9Y_029
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAGAAACGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8I9Y|1|C1|G|1331, 8I9Y|1|C1|A|1333, 8I9Y|1|C1|G|1336, 8I9Y|1|C1|U|1338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9Y_029 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.2065
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8I9Y|1|C1|U|1329
8I9Y|1|C1|A|1330
8I9Y|1|C1|G|1331
8I9Y|1|C1|A|1332
8I9Y|1|C1|A|1333
8I9Y|1|C1|A|1334
8I9Y|1|C1|C|1335
8I9Y|1|C1|G|1336
8I9Y|1|C1|A|1337
8I9Y|1|C1|U|1338
8I9Y|1|C1|G|1339
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CV
- Putative 60S ribosomal protein
- Chain LC
- 60S ribosomal protein L4-like protein
- Chain LF
- 60S ribosomal protein l7-like protein
- Chain LQ
- Ribosomal protein L18-like protein
Coloring options: