HL_8I9Y_030

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_030 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.1193

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8I9Y|1|C1|C|1385
8I9Y|1|C1|G|1386
8I9Y|1|C1|U|1387
8I9Y|1|C1|G|1388
8I9Y|1|C1|A|1389
8I9Y|1|C1|G|1390

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CV

Putative 60S ribosomal protein

Chain Le

60S ribosomal protein L32-like protein