HL_8I9Y_031
3D structure
- PDB id
- 8I9Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9Y_031 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.187
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8I9Y|1|C1|A|1444
8I9Y|1|C1|U|1445
8I9Y|1|C1|G|1446
8I9Y|1|C1|A|1447
8I9Y|1|C1|G|1448
8I9Y|1|C1|A|1449
8I9Y|1|C1|A|1450
8I9Y|1|C1|C|1451
8I9Y|1|C1|U|1452
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain CQ
- Ribosome biogenesis protein RLP24
- Chain LP
- 60S ribosomal protein l17-like protein
- Chain LR
- Ribosomal protein L19
- Chain Ld
- Putative 60S ribosomal protein
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