HL_8I9Y_034

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUCGUG

Length

8 nucleotides

Bulged bases

8I9Y|1|C1|C|1548, 8I9Y|1|C1|U|1549, 8I9Y|1|C1|C|1550, 8I9Y|1|C1|G|1551, 8I9Y|1|C1|U|1552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_034 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.12

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8I9Y|1|C1|C|1546
8I9Y|1|C1|A|1547
8I9Y|1|C1|C|1548
8I9Y|1|C1|U|1549
8I9Y|1|C1|C|1550
8I9Y|1|C1|G|1551
8I9Y|1|C1|U|1552
8I9Y|1|C1|G|1553

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain C2

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

Ribosome biogenesis protein ERB1

Chain CJ

Pescadillo homolog

Chain CM

60S ribosomal protein l7-like protein