HL_8I9Y_044

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8I9Y|1|C1|G|2333, 8I9Y|1|C1|A|2334, 8I9Y|1|C1|A|2335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_044 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1177

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8I9Y|1|C1|G|2331
8I9Y|1|C1|G|2332
8I9Y|1|C1|G|2333
8I9Y|1|C1|A|2334
8I9Y|1|C1|A|2335
8I9Y|1|C1|C|2336
8I9Y|1|C1|G|2337
8I9Y|1|C1|G|2338
8I9Y|1|C1|G|2339
8I9Y|1|C1|C|2340

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CH

Nucleolar GTP-binding protein 1

Chain CL

Putative GTP binding protein

Chain Le

60S ribosomal protein L32-like protein