HL_8I9Y_048

3D structure

PDB id

8I9Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Y_048 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.2596

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

8I9Y|1|C1|C|2798
8I9Y|1|C1|G|2799
8I9Y|1|C1|U|2800
8I9Y|1|C1|A|2805
8I9Y|1|C1|G|2806

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain CL

Putative GTP binding protein

Chain CU

rRNA-processing protein EBP2

Chain LS

60S ribosomal protein L20