HL_8I9Z_034
3D structure
- PDB id
- 8I9Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CACUCGUG
- Length
- 8 nucleotides
- Bulged bases
- 8I9Z|1|C1|C|1548, 8I9Z|1|C1|C|1550, 8I9Z|1|C1|G|1551
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8I9Z_034 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1288
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
8I9Z|1|C1|C|1546
8I9Z|1|C1|A|1547
8I9Z|1|C1|C|1548
8I9Z|1|C1|U|1549
8I9Z|1|C1|C|1550
8I9Z|1|C1|G|1551
8I9Z|1|C1|U|1552
8I9Z|1|C1|G|1553
Current chains
- Chain C1
- RNA (3341-MER)
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CC
- Ribosome biogenesis protein ERB1
- Chain CJ
- Pescadillo homolog
- Chain CM
- 60S ribosomal protein l7-like protein
- Chain LZ
- 60S ribosomal protein L27
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