HL_8I9Z_064

3D structure

PDB id

8I9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8I9Z_064 not in the Motif Atlas

Geometric match to HL_7RQB_015

Geometric discrepancy: 0.2187

The information below is about HL_7RQB_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8I9Z|1|C2|G|196
8I9Z|1|C2|C|197
8I9Z|1|C2|U|198
8I9Z|1|C2|G|199
8I9Z|1|C2|C|200
8I9Z|1|C2|U|201

Current chains

Chain C2

RNA (319-MER)

Nearby chains

Chain CB

Ribosome biogenesis protein C8F11.04

Chain CI

Putative RNA-binding protein