HL_8IA0_011

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IA0_011 not in the Motif Atlas

Homologous match to HL_5TBW_011

Geometric discrepancy: 0.0985

The information below is about HL_5TBW_011

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IA0|1|C1|U|374
8IA0|1|C1|G|375
8IA0|1|C1|A|376
8IA0|1|C1|A|377
8IA0|1|C1|A|378
8IA0|1|C1|A|379

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LP

60S ribosomal protein l17-like protein