HL_8IA0_014

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCUG

Length

5 nucleotides

Bulged bases

8IA0|1|C1|U|589, 8IA0|1|C1|U|591

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IA0_014 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.1748

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8IA0|1|C1|C|588
8IA0|1|C1|U|589
8IA0|1|C1|C|590
8IA0|1|C1|U|591
8IA0|1|C1|G|592

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LC

60S ribosomal protein L4-like protein

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein l7-like protein