HL_8IA0_017

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8IA0|1|C1|U|718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IA0_017 not in the Motif Atlas

Geometric match to HL_5LYS_002

Geometric discrepancy: 0.0893

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8IA0|1|C1|C|716
8IA0|1|C1|U|717
8IA0|1|C1|U|718
8IA0|1|C1|C|719
8IA0|1|C1|G|720
8IA0|1|C1|G|721

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LQ

Ribosomal protein L18-like protein