HL_8IA0_058

3D structure

PDB id

8IA0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCCGG

Length

6 nucleotides

Bulged bases

8IA0|1|C1|C|3144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IA0_058 not in the Motif Atlas

Geometric match to HL_5Y85_004

Geometric discrepancy: 0.0853

The information below is about HL_5Y85_004

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8IA0|1|C1|C|3142
8IA0|1|C1|U|3143
8IA0|1|C1|C|3144
8IA0|1|C1|C|3145
8IA0|1|C1|G|3146
8IA0|1|C1|G|3147

Current chains

Chain C1

RNA (3341-MER)

Nearby chains

Chain LH

60S ribosomal protein l9-like protein

Chain LM

60S ribosomal protein L14-like protein

Chain LO

60S ribosomal protein L16-like protein