HL_8IDT_005

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8IDT|1|2|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDT_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.2535

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8IDT|1|2|U|204
8IDT|1|2|C|205
8IDT|1|2|U|206
8IDT|1|2|G|207
8IDT|1|2|A|208
8IDT|1|2|U|209
8IDT|1|2|C|210
8IDT|1|2|G|211

Current chains

Chain 2

28S rRNA

Nearby chains

Chain h

60S ribosomal protein L26