HL_8IDT_038

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUGGCCUCCGUUG

Length

15 nucleotides

Bulged bases

8IDT|1|2|C|2488, 8IDT|1|2|C|2489, 8IDT|1|2|U|2490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDT_038 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.3867

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IDT|1|2|C|2482
8IDT|1|2|G|2483
8IDT|1|2|A|2484
8IDT|1|2|U|2485
8IDT|1|2|G|2486
8IDT|1|2|G|2487
8IDT|1|2|C|2488
8IDT|1|2|C|2489
8IDT|1|2|U|2490
8IDT|1|2|C|2491
8IDT|1|2|C|2492
8IDT|1|2|G|2493
8IDT|1|2|U|2494
8IDT|1|2|U|2495
8IDT|1|2|G|2496

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain g

60S ribosomal protein L23a