HL_8IDT_048

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8IDT|1|2|U|2874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDT_048 not in the Motif Atlas

Geometric match to HL_4V9F_044

Geometric discrepancy: 0.1066

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8IDT|1|2|C|2872
8IDT|1|2|U|2873
8IDT|1|2|U|2874
8IDT|1|2|C|2875
8IDT|1|2|G|2876
8IDT|1|2|G|2877

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

G Protein Nucleolar 2

Chain X

60S ribosomal protein L37a