HL_8IDT_055

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGACUUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDT_055 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.1496

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8IDT|1|2|A|3945
8IDT|1|2|G|3946
8IDT|1|2|A|3947
8IDT|1|2|C|3948
8IDT|1|2|U|4066
8IDT|1|2|U|4067
8IDT|1|2|U|4068

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36