HL_8IDT_083

3D structure

PDB id

8IDT (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State G

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGCGGACUGUCCCCAGUGCGCCC

Length

24 nucleotides

Bulged bases

8IDT|1|2|G|1178, 8IDT|1|2|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDT|1|2|G|1169
8IDT|1|2|G|1170
8IDT|1|2|G|1171
8IDT|1|2|C|1172
8IDT|1|2|G|1173
8IDT|1|2|G|1174
8IDT|1|2|A|1175
8IDT|1|2|C|1176
8IDT|1|2|U|1177
8IDT|1|2|G|1178
8IDT|1|2|U|1179
8IDT|1|2|C|1180
8IDT|1|2|C|1181
8IDT|1|2|C|1182
8IDT|1|2|C|1183
8IDT|1|2|A|1184
8IDT|1|2|G|1185
8IDT|1|2|U|1186
8IDT|1|2|G|1187
8IDT|1|2|C|1188
8IDT|1|2|G|1189
8IDT|1|2|C|1190
8IDT|1|2|C|1191
8IDT|1|2|C|1192

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain r

60S ribosomal protein L5