HL_8IDY_014

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCCCGGCGCGCCGGG

Length

16 nucleotides

Bulged bases

8IDY|1|2|C|995, 8IDY|1|2|C|1047

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_014 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.21

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IDY|1|2|C|988
8IDY|1|2|U|989
8IDY|1|2|C|990
8IDY|1|2|C|991
8IDY|1|2|C|992
8IDY|1|2|G|993
8IDY|1|2|G|994
8IDY|1|2|C|995
8IDY|1|2|G|996
8IDY|1|2|C|1047
8IDY|1|2|G|1048
8IDY|1|2|C|1049
8IDY|1|2|C|1050
8IDY|1|2|G|1051
8IDY|1|2|G|1064
8IDY|1|2|G|1065

Current chains

Chain 2

28S rRNA

Nearby chains

Chain o

60S ribosomal protein L6