HL_8IDY_015

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUGUCCCCAGU

Length

13 nucleotides

Bulged bases

8IDY|1|2|G|1178, 8IDY|1|2|U|1179

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_015 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.3237

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IDY|1|2|G|1174
8IDY|1|2|A|1175
8IDY|1|2|C|1176
8IDY|1|2|U|1177
8IDY|1|2|G|1178
8IDY|1|2|U|1179
8IDY|1|2|C|1180
8IDY|1|2|C|1181
8IDY|1|2|C|1182
8IDY|1|2|C|1183
8IDY|1|2|A|1184
8IDY|1|2|G|1185
8IDY|1|2|U|1186

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain r

60S ribosomal protein L5