HL_8IDY_020

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

8IDY|1|2|G|1408, 8IDY|1|2|U|1410, 8IDY|1|2|C|1411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_020 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3583

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IDY|1|2|C|1405
8IDY|1|2|G|1406
8IDY|1|2|C|1407
8IDY|1|2|G|1408
8IDY|1|2|C|1409
8IDY|1|2|U|1410
8IDY|1|2|C|1411
8IDY|1|2|G|1412

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29