Loop HL_8IDY

3D structure

PDB id: 8IDY (explore in PDB, NAKB, or RNA 3D Hub)
Description: human nuclear pre-60S ribosomal particle - State F
Experimental method: ELECTRON MICROSCOPY
Resolution: 3 Å

Loop

Sequence: CAGUCGAGAGUGGACGGGAGCGGCGGCCCGGAGCCCCGCGGACGCUACG
Length: 49 nucleotides
Bulged bases: 8IDY|1|2|U|2097, 8IDY|1|2|C|2255, 8IDY|1|2|U|2267, 8IDY|1|2|C|2269
QA status: Missing nucleotides

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8IDY|1|2|C|2087
8IDY|1|2|A|2088
8IDY|1|2|G|2089
8IDY|1|2|U|2090
8IDY|1|2|C|2091
8IDY|1|2|G|2092
8IDY|1|2|A|2093
8IDY|1|2|G|2094
8IDY|1|2|A|2095
8IDY|1|2|G|2096
8IDY|1|2|U|2097
8IDY|1|2|G|2098
8IDY|1|2|G|2099
8IDY|1|2|A|2100
8IDY|1|2|C|2101
8IDY|1|2|G|2102
8IDY|1|2|G|2103
8IDY|1|2|G|2104
8IDY|1|2|A|2105
8IDY|1|2|G|2106
8IDY|1|2|C|2107
8IDY|1|2|G|2108
8IDY|1|2|G|2109
8IDY|1|2|C|2110
8IDY|1|2|G|2111
8IDY|1|2|G|2112
8IDY|1|2|C|2113
8IDY|1|2|C|2249
8IDY|1|2|C|2250
8IDY|1|2|G|2251
8IDY|1|2|G|2252
8IDY|1|2|A|2253
8IDY|1|2|G|2254
8IDY|1|2|C|2255
8IDY|1|2|C|2256
8IDY|1|2|C|2257
8IDY|1|2|C|2258
8IDY|1|2|G|2259
8IDY|1|2|C|2260
8IDY|1|2|G|2261
8IDY|1|2|G|2262
8IDY|1|2|A|2263
8IDY|1|2|C|2264
8IDY|1|2|G|2265
8IDY|1|2|C|2266
8IDY|1|2|U|2267
8IDY|1|2|A|2268
8IDY|1|2|C|2269
8IDY|1|2|G|2270

Current chains

Chain 2: 28S rRNA

Nearby chains

Chain C: 60S ribosomal protein L29
Chain D: 60S ribosomal protein L4
Chain Z: 60S ribosomal protein L18
Chain l: 60S ribosomal protein L28
Chain o: 60S ribosomal protein L6
Chain p: 60S ribosomal protein L7

HL_8IDY_033