HL_8IDY_040

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_040 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2259

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8IDY|1|2|C|2560
8IDY|1|2|C|2561
8IDY|1|2|G|2562
8IDY|1|2|C|2563
8IDY|1|2|G|2564
8IDY|1|2|A|2565
8IDY|1|2|G|2566
8IDY|1|2|G|2567

Current chains

Chain 2

28S rRNA

Nearby chains