HL_8IDY_055

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUU

Length

68 nucleotides

Bulged bases

8IDY|1|2|A|3947, 8IDY|1|2|G|3958, 8IDY|1|2|A|3962, 8IDY|1|2|C|4038, 8IDY|1|2|U|4044, 8IDY|1|2|C|4054

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IDY|1|2|A|3945
8IDY|1|2|G|3946
8IDY|1|2|A|3947
8IDY|1|2|C|3948
8IDY|1|2|A|3949
8IDY|1|2|U|3950
8IDY|1|2|G|3951
8IDY|1|2|A|3952
8IDY|1|2|G|3953
8IDY|1|2|A|3954
8IDY|1|2|G|3955
8IDY|1|2|G|3956
8IDY|1|2|U|3957
8IDY|1|2|G|3958
8IDY|1|2|U|3959
8IDY|1|2|A|3960
8IDY|1|2|G|3961
8IDY|1|2|A|3962
8IDY|1|2|A|3963
8IDY|1|2|U|3964
8IDY|1|2|A|3965
8IDY|1|2|A|3966
8IDY|1|2|G|3967
8IDY|1|2|U|3968
8IDY|1|2|G|3969
8IDY|1|2|G|3970
8IDY|1|2|G|3971
8IDY|1|2|A|3972
8IDY|1|2|G|3973
8IDY|1|2|G|3974
8IDY|1|2|C|3975
8IDY|1|2|C|3976
8IDY|1|2|C|3977
8IDY|1|2|G|4034
8IDY|1|2|G|4035
8IDY|1|2|G|4036
8IDY|1|2|C|4037
8IDY|1|2|C|4038
8IDY|1|2|G|4039
8IDY|1|2|C|4040
8IDY|1|2|C|4041
8IDY|1|2|G|4042
8IDY|1|2|G|4043
8IDY|1|2|U|4044
8IDY|1|2|G|4045
8IDY|1|2|A|4046
8IDY|1|2|A|4047
8IDY|1|2|A|4048
8IDY|1|2|U|4049
8IDY|1|2|A|4050
8IDY|1|2|C|4051
8IDY|1|2|C|4052
8IDY|1|2|A|4053
8IDY|1|2|C|4054
8IDY|1|2|U|4055
8IDY|1|2|A|4056
8IDY|1|2|C|4057
8IDY|1|2|U|4058
8IDY|1|2|C|4059
8IDY|1|2|U|4060
8IDY|1|2|G|4061
8IDY|1|2|A|4062
8IDY|1|2|U|4063
8IDY|1|2|C|4064
8IDY|1|2|G|4065
8IDY|1|2|U|4066
8IDY|1|2|U|4067
8IDY|1|2|U|4068

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain t

60S ribosomal protein L10a

Chain u

Protein SDA1 homolog