HL_8IDY_065

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AAGCAGAAUU

Length

10 nucleotides

Bulged bases

8IDY|1|2|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_065 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.1406

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IDY|1|2|A|4473
8IDY|1|2|A|4474
8IDY|1|2|G|4475
8IDY|1|2|C|4476
8IDY|1|2|A|4477
8IDY|1|2|G|4478
8IDY|1|2|A|4479
8IDY|1|2|A|4480
8IDY|1|2|U|4481
8IDY|1|2|U|4482

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 4

GTP-binding protein 4

Chain I

60S ribosomal protein L9

Chain v

Ribosome biogenesis protein NSA2 homolog