HL_8IDY_067

3D structure

PDB id

8IDY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IDY_067 not in the Motif Atlas

Homologous match to HL_5TBW_064

Geometric discrepancy: 0.1038

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8IDY|1|2|C|4540
8IDY|1|2|G|4541
8IDY|1|2|U|4542
8IDY|1|2|G|4543
8IDY|1|2|A|4544
8IDY|1|2|G|4545

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

G Protein Nucleolar 2

Chain m

60S ribosomal protein L8

Chain u

Protein SDA1 homolog