HL_8IDY_080
3D structure
- PDB id
- 8IDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGUUCCUCC
- Length
- 9 nucleotides
- Bulged bases
- 8IDY|1|8|U|124, 8IDY|1|8|C|125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IDY_080 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3742
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8IDY|1|8|G|121
8IDY|1|8|G|122
8IDY|1|8|U|123
8IDY|1|8|U|124
8IDY|1|8|C|125
8IDY|1|8|C|126
8IDY|1|8|U|127
8IDY|1|8|C|128
8IDY|1|8|C|129
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 60S ribosomal protein L23a
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