HL_8IDY_085
3D structure
- PDB id
- 8IDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State F
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUU
- Length
- 122 nucleotides
- Bulged bases
- 8IDY|1|2|A|3947, 8IDY|1|2|U|3957, 8IDY|1|2|G|3958, 8IDY|1|2|U|3959, 8IDY|1|2|A|3962, 8IDY|1|2|A|3965, 8IDY|1|2|G|3969, 8IDY|1|2|G|3970, 8IDY|1|2|C|3978, 8IDY|1|2|C|3979, 8IDY|1|2|G|3980, 8IDY|1|2|G|3981, 8IDY|1|2|C|3982, 8IDY|1|2|G|3983, 8IDY|1|2|C|3984, 8IDY|1|2|C|3985, 8IDY|1|2|C|3986, 8IDY|1|2|C|3987, 8IDY|1|2|C|3988, 8IDY|1|2|C|3989, 8IDY|1|2|C|3990, 8IDY|1|2|G|3991, 8IDY|1|2|G|3992, 8IDY|1|2|U|3993, 8IDY|1|2|G|3994, 8IDY|1|2|U|3995, 8IDY|1|2|C|3996, 8IDY|1|2|C|3997, 8IDY|1|2|C|3998, 8IDY|1|2|C|3999, 8IDY|1|2|G|4000, 8IDY|1|2|C|4001, 8IDY|1|2|G|4002, 8IDY|1|2|A|4003, 8IDY|1|2|G|4004, 8IDY|1|2|G|4005, 8IDY|1|2|G|4006, 8IDY|1|2|G|4007, 8IDY|1|2|C|4008, 8IDY|1|2|C|4009, 8IDY|1|2|C|4010, 8IDY|1|2|G|4011, 8IDY|1|2|G|4012, 8IDY|1|2|G|4013, 8IDY|1|2|G|4014, 8IDY|1|2|C|4015, 8IDY|1|2|G|4016, 8IDY|1|2|G|4017, 8IDY|1|2|G|4018, 8IDY|1|2|G|4019, 8IDY|1|2|U|4020, 8IDY|1|2|C|4021, 8IDY|1|2|C|4022, 8IDY|1|2|G|4023, 8IDY|1|2|C|4024, 8IDY|1|2|C|4025, 8IDY|1|2|G|4026, 8IDY|1|2|G|4027, 8IDY|1|2|C|4028, 8IDY|1|2|C|4029, 8IDY|1|2|C|4030, 8IDY|1|2|U|4031, 8IDY|1|2|G|4032, 8IDY|1|2|C|4033, 8IDY|1|2|G|4034, 8IDY|1|2|G|4035, 8IDY|1|2|C|4038, 8IDY|1|2|G|4039, 8IDY|1|2|G|4042, 8IDY|1|2|U|4044, 8IDY|1|2|A|4046, 8IDY|1|2|A|4047, 8IDY|1|2|U|4049, 8IDY|1|2|C|4051, 8IDY|1|2|C|4052, 8IDY|1|2|A|4053, 8IDY|1|2|C|4054, 8IDY|1|2|C|4059, 8IDY|1|2|G|4061
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IDY|1|2|G|3946
8IDY|1|2|A|3947
8IDY|1|2|C|3948
8IDY|1|2|A|3949
8IDY|1|2|U|3950
8IDY|1|2|G|3951
8IDY|1|2|A|3952
8IDY|1|2|G|3953
8IDY|1|2|A|3954
8IDY|1|2|G|3955
8IDY|1|2|G|3956
8IDY|1|2|U|3957
8IDY|1|2|G|3958
8IDY|1|2|U|3959
8IDY|1|2|A|3960
8IDY|1|2|G|3961
8IDY|1|2|A|3962
8IDY|1|2|A|3963
8IDY|1|2|U|3964
8IDY|1|2|A|3965
8IDY|1|2|A|3966
8IDY|1|2|G|3967
8IDY|1|2|U|3968
8IDY|1|2|G|3969
8IDY|1|2|G|3970
8IDY|1|2|G|3971
8IDY|1|2|A|3972
8IDY|1|2|G|3973
8IDY|1|2|G|3974
8IDY|1|2|C|3975
8IDY|1|2|C|3976
8IDY|1|2|C|3977
8IDY|1|2|C|3978
8IDY|1|2|C|3979
8IDY|1|2|G|3980
8IDY|1|2|G|3981
8IDY|1|2|C|3982
8IDY|1|2|G|3983
8IDY|1|2|C|3984
8IDY|1|2|C|3985
8IDY|1|2|C|3986
8IDY|1|2|C|3987
8IDY|1|2|C|3988
8IDY|1|2|C|3989
8IDY|1|2|C|3990
8IDY|1|2|G|3991
8IDY|1|2|G|3992
8IDY|1|2|U|3993
8IDY|1|2|G|3994
8IDY|1|2|U|3995
8IDY|1|2|C|3996
8IDY|1|2|C|3997
8IDY|1|2|C|3998
8IDY|1|2|C|3999
8IDY|1|2|G|4000
8IDY|1|2|C|4001
8IDY|1|2|G|4002
8IDY|1|2|A|4003
8IDY|1|2|G|4004
8IDY|1|2|G|4005
8IDY|1|2|G|4006
8IDY|1|2|G|4007
8IDY|1|2|C|4008
8IDY|1|2|C|4009
8IDY|1|2|C|4010
8IDY|1|2|G|4011
8IDY|1|2|G|4012
8IDY|1|2|G|4013
8IDY|1|2|G|4014
8IDY|1|2|C|4015
8IDY|1|2|G|4016
8IDY|1|2|G|4017
8IDY|1|2|G|4018
8IDY|1|2|G|4019
8IDY|1|2|U|4020
8IDY|1|2|C|4021
8IDY|1|2|C|4022
8IDY|1|2|G|4023
8IDY|1|2|C|4024
8IDY|1|2|C|4025
8IDY|1|2|G|4026
8IDY|1|2|G|4027
8IDY|1|2|C|4028
8IDY|1|2|C|4029
8IDY|1|2|C|4030
8IDY|1|2|U|4031
8IDY|1|2|G|4032
8IDY|1|2|C|4033
8IDY|1|2|G|4034
8IDY|1|2|G|4035
8IDY|1|2|G|4036
8IDY|1|2|C|4037
8IDY|1|2|C|4038
8IDY|1|2|G|4039
8IDY|1|2|C|4040
8IDY|1|2|C|4041
8IDY|1|2|G|4042
8IDY|1|2|G|4043
8IDY|1|2|U|4044
8IDY|1|2|G|4045
8IDY|1|2|A|4046
8IDY|1|2|A|4047
8IDY|1|2|A|4048
8IDY|1|2|U|4049
8IDY|1|2|A|4050
8IDY|1|2|C|4051
8IDY|1|2|C|4052
8IDY|1|2|A|4053
8IDY|1|2|C|4054
8IDY|1|2|U|4055
8IDY|1|2|A|4056
8IDY|1|2|C|4057
8IDY|1|2|U|4058
8IDY|1|2|C|4059
8IDY|1|2|U|4060
8IDY|1|2|G|4061
8IDY|1|2|A|4062
8IDY|1|2|U|4063
8IDY|1|2|C|4064
8IDY|1|2|G|4065
8IDY|1|2|U|4066
8IDY|1|2|U|4067
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L36
- Chain t
- 60S ribosomal protein L10a
- Chain u
- Protein SDA1 homolog
Coloring options: