HL_8IE3_057

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

C(I4U)G(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8IE3|1|2|G|4195

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IE3_057 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.5406

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

8IE3|1|2|C|4193
8IE3|1|2|I4U|4194
8IE3|1|2|G|4195
8IE3|1|2|OMG|4196
8IE3|1|2|G|4197
8IE3|1|2|G|4198
8IE3|1|2|C|4199
8IE3|1|2|G|4200
8IE3|1|2|G|4201

Current chains

Chain 2

28S rRNA

Nearby chains

Chain R

Ribosome biogenesis protein NSA2 homolog