HL_8IE3_060

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IE3_060 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.2666

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8IE3|1|2|C|4270
8IE3|1|2|A|4271
8IE3|1|2|G|4272
8IE3|1|2|A|4273
8IE3|1|2|A|4274
8IE3|1|2|G|4275
8IE3|1|2|G|4276
8IE3|1|2|G|4277

Current chains

Chain 2

28S rRNA

Nearby chains

Chain c

60S ribosomal protein L21