HL_8IE3_063

3D structure

PDB id

8IE3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUU(E6G)GGUUUUA

Length

11 nucleotides

Bulged bases

8IE3|1|2|U|4354

QA status

Modified nucleotides: E6G

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IE3_063 not in the Motif Atlas

Geometric match to HL_8H1B_001

Geometric discrepancy: 0.2651

The information below is about HL_8H1B_001

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8IE3|1|2|U|4352
8IE3|1|2|U|4353
8IE3|1|2|U|4354
8IE3|1|2|E6G|4355
8IE3|1|2|G|4356
8IE3|1|2|G|4357
8IE3|1|2|U|4358
8IE3|1|2|U|4359
8IE3|1|2|U|4360
8IE3|1|2|U|4361
8IE3|1|2|A|4362

Current chains

Chain 2

28S rRNA

Nearby chains

Chain K

60S ribosomal protein L36

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13