HL_8IFB_035

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFB_035 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.3118

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8IFB|1|A|C|1449
8IFB|1|A|U|1450
8IFB|1|A|U|1451
8IFB|1|A|C|1452
8IFB|1|A|G|1453
8IFB|1|A|G|1454

Current chains

Chain A

16S ribosomal RNA

Nearby chains