HL_8IFB_042

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8IFB|1|a|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFB_042 not in the Motif Atlas

Homologous match to HL_5J7L_139

Geometric discrepancy: 0.071

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8IFB|1|a|G|194
8IFB|1|a|A|195
8IFB|1|a|A|196
8IFB|1|a|A|197
8IFB|1|a|C|198
8IFB|1|a|A|199
8IFB|1|a|U|200
8IFB|1|a|C|201

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain k

50S ribosomal protein L15

Chain w

50S ribosomal protein L28