HL_8IFB_100

3D structure

PDB id

8IFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8IFB|1|a|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFB_100 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0464

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8IFB|1|a|G|2819
8IFB|1|a|A|2820
8IFB|1|a|A|2821
8IFB|1|a|G|2822
8IFB|1|a|A|2823
8IFB|1|a|C|2824
8IFB|1|a|G|2825
8IFB|1|a|A|2826
8IFB|1|a|C|2827

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain m

50S ribosomal protein L17