HL_8IFC_004
3D structure
- PDB id
- 8IFC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-bound E.coli 70S ribosome in the PURE system
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGCCUGG(H2U)AG
- Length
- 11 nucleotides
- Bulged bases
- 8IFC|1|6|G|19, 8IFC|1|6|G|20
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFC_004 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1176
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
8IFC|1|6|C|13
8IFC|1|6|A|14
8IFC|1|6|G|15
8IFC|1|6|C|16
8IFC|1|6|C|17
8IFC|1|6|U|18
8IFC|1|6|G|19
8IFC|1|6|G|20
8IFC|1|6|H2U|21
8IFC|1|6|A|22
8IFC|1|6|G|23
Current chains
- Chain 6
- P-site tRNAf-Met
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- 50S ribosomal protein L5
Coloring options: