HL_8IFC_019

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFC_019 not in the Motif Atlas

Homologous match to HL_5J7L_013

Geometric discrepancy: 0.0928

The information below is about HL_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFC|1|A|G|521
8IFC|1|A|C|522
8IFC|1|A|A|523
8IFC|1|A|G|524
8IFC|1|A|C|525
8IFC|1|A|C|526
8IFC|1|A|G7M|527
8IFC|1|A|C|528

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 7

mRNA

Chain L

30S ribosomal protein S12