HL_8IFC_053

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

8IFC|1|a|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFC_053 not in the Motif Atlas

Homologous match to HL_5J7L_150

Geometric discrepancy: 0.0584

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8IFC|1|a|U|566
8IFC|1|a|U|567
8IFC|1|a|U|568
8IFC|1|a|U|569
8IFC|1|a|G|570
8IFC|1|a|U|571
8IFC|1|a|A|572
8IFC|1|a|U|573
8IFC|1|a|A|574
8IFC|1|a|A|575

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

50S ribosomal protein L15

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21

Chain z

50S ribosomal protein L32