HL_8IFC_061

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFC_061 not in the Motif Atlas

Homologous match to HL_7RQB_026

Geometric discrepancy: 0.531

The information below is about HL_7RQB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56241.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

15

Unit IDs

8IFC|1|a|C|885
8IFC|1|a|A|886
8IFC|1|a|U|887
8IFC|1|a|C|888
8IFC|1|a|C|889
8IFC|1|a|C|890
8IFC|1|a|G|891

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13