HL_8IFC_095

3D structure

PDB id

8IFC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-bound E.coli 70S ribosome in the PURE system

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFC_095 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1084

The information below is about HL_4WF9_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8IFC|1|a|C|2551
8IFC|1|a|OMU|2552
8IFC|1|a|G|2553
8IFC|1|a|U|2554
8IFC|1|a|U|2555
8IFC|1|a|C|2556
8IFC|1|a|G|2557

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA