HL_8IFD_003
3D structure
- PDB id
- 8IFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dibekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8IFD_003 not in the Motif Atlas
- Homologous match to HL_5TBW_003
- Geometric discrepancy: 0.0888
- The information below is about HL_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_67216.9
- Basepair signature
- cWW-cWW-F-tSH
- Number of instances in this motif group
- 9
Unit IDs
8IFD|1|1A|C|89
8IFD|1|1A|G|90
8IFD|1|1A|G|91
8IFD|1|1A|C|92
8IFD|1|1A|G|93
8IFD|1|1A|A|94
8IFD|1|1A|G|95
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 2F
- 60S ribosomal protein L13
- Chain 2K
- 60S ribosomal protein L18
- Chain 2U
- 60S ribosomal protein L27a
- Chain 2i
- 60S ribosomal protein L36a
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