HL_8IFD_005

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8IFD|1|1A|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.3132

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8IFD|1|1A|U|204
8IFD|1|1A|C|205
8IFD|1|1A|U|206
8IFD|1|1A|G|207
8IFD|1|1A|A|208
8IFD|1|1A|U|209
8IFD|1|1A|C|210
8IFD|1|1A|G|211

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2S

60S ribosomal protein L26

Chain 2Y

60S ribosomal protein L32