HL_8IFD_013

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGGCCC

Length

6 nucleotides

Bulged bases

8IFD|1|1A|C|903

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_013 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2949

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IFD|1|1A|G|758
8IFD|1|1A|G|759
8IFD|1|1A|G|760
8IFD|1|1A|C|903
8IFD|1|1A|C|904
8IFD|1|1A|C|905

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2C

60S ribosomal protein L9