HL_8IFD_014

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

UCCCGGCGCGCCGG

Length

14 nucleotides

Bulged bases

8IFD|1|1A|C|991, 8IFD|1|1A|C|995

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_014 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.2872

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8IFD|1|1A|U|989
8IFD|1|1A|C|990
8IFD|1|1A|C|991
8IFD|1|1A|C|992
8IFD|1|1A|G|993
8IFD|1|1A|G|994
8IFD|1|1A|C|995
8IFD|1|1A|G|996
8IFD|1|1A|C|1047
8IFD|1|1A|G|1048
8IFD|1|1A|C|1049
8IFD|1|1A|C|1050
8IFD|1|1A|G|1051
8IFD|1|1A|G|1064

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6