HL_8IFD_016

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCGAAGAGG

Length

9 nucleotides

Bulged bases

8IFD|1|1A|A|1254, 8IFD|1|1A|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_016 not in the Motif Atlas

Geometric match to HL_6N5P_004

Geometric discrepancy: 0.3634

The information below is about HL_6N5P_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8IFD|1|1A|C|1251
8IFD|1|1A|C|1252
8IFD|1|1A|G|1253
8IFD|1|1A|A|1254
8IFD|1|1A|A|1255
8IFD|1|1A|G|1256
8IFD|1|1A|A|1257
8IFD|1|1A|G|1258
8IFD|1|1A|G|1259

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains