HL_8IFD_020

3D structure

PDB id

8IFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dibekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGCGCUCG

Length

8 nucleotides

Bulged bases

8IFD|1|1A|U|1410, 8IFD|1|1A|C|1411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8IFD_020 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3605

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8IFD|1|1A|C|1405
8IFD|1|1A|G|1406
8IFD|1|1A|C|1407
8IFD|1|1A|G|1408
8IFD|1|1A|C|1409
8IFD|1|1A|U|1410
8IFD|1|1A|C|1411
8IFD|1|1A|G|1412

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 2V

60S ribosomal protein L29